RL-MD: A Novel Reinforcement Learning Approach for DNA Motif Discovery

The extraction of sequence patterns from a collection of functionally linked unlabeled DNA sequences is known as DNA motif discovery, and it is a key task in computational biology. Several deep learning-based techniques have recently been introduced to address this issue. However, these algorithms can not be used in real-world situations because of the need for labeled data. Here, we presented RL-MD, a novel reinforcement learning based approach for DNA motif discovery task. RL-MD takes unlabelled data as input, employs a relative information-based method to evaluate each proposed motif, and utilizes these continuous evaluation results as the reward. The experiments show that RL-MD can identify high-quality motifs in real-world data.Comment: This paper is accepted by DSAA2022. The 9th IEEE International Conference on Data Science and Advanced Analytic

FedET: A Communication-Efficient Federated Class-Incremental Learning Framework Based on Enhanced Transformer

Federated Learning (FL) has been widely concerned for it enables decentralized learning while ensuring data privacy. However, most existing methods unrealistically assume that the classes encountered by local clients are fixed over time. After learning new classes, this assumption will make the model's catastrophic forgetting of old classes significantly severe. Moreover, due to the limitation of communication cost, it is challenging to use large-scale models in FL, which will affect the prediction accuracy. To address these challenges, we propose a novel framework, Federated Enhanced Transformer (FedET), which simultaneously achieves high accuracy and low communication cost. Specifically, FedET uses Enhancer, a tiny module, to absorb and communicate new knowledge, and applies pre-trained Transformers combined with different Enhancers to ensure high precision on various tasks. To address local forgetting caused by new classes of new tasks and global forgetting brought by non-i.i.d (non-independent and identically distributed) class imbalance across different local clients, we proposed an Enhancer distillation method to modify the imbalance between old and new knowledge and repair the non-i.i.d. problem. Experimental results demonstrate that FedET's average accuracy on representative benchmark datasets is 14.1% higher than the state-of-the-art method, while FedET saves 90% of the communication cost compared to the previous method.Comment: Accepted by 2023 International Joint Conference on Artificial Intelligence (IJCAI2023